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Ao Chen, Sha Liao, Mengnan Cheng, Kailong Ma, Liang Li Wu, Yiwei Lai, Xiaojie Qiu, Jin Yang, Jiangshan Xu, Shijie Hao and 59 more
Spatially resolved transcriptomic technologies are promising tools to study complex biological processes such as mammalian embryogenesis. However, the imbalance between resolution, gene capture, and field of view of current methodologies precludes their systematic application to analyze relatively large and three-dimensional mid- and late-gestation embryos. Here, we combined DNA nanoball (DNB)-patterned arrays and in situ RNA capture to create spatial enhanced resolution omics-sequencing (Stereo-seq). We applied Stereo-seq to generate the mouse organogenesis spatiotemporal transcriptomic atlas (MOSTA), which maps with single-cell resolution and high sensitivity the kinetics and directionality of transcriptional variation during mouse organogenesis. We used this information to gain insight into the molecular basis of spatial cell heterogeneity and cell fate specification in developing tissues such as the dorsal midbrain. Our panoramic atlas will facilitate in-depth investigation of longstanding questions concerning normal and abnormal mammalian development.
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Chen, A., Liao, S., Cheng, M., Ma, K., Wu, L. L., Lai, Y., Qiu, X., Yang, J., Xu, J., Hao, S., Wang, X., Lü, H., Chen, X. X., Liu, X., Huang, X., Zhao, L., Yan, H., Jiang, Y., Peng, J., … Wang, J. (2022). Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays. Cell, 185(10), 1777–1792.e21. https://doi.org/10.1016/j.cell.2022.04.003
Chen, Ao, et al. "Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays." Cell, vol. 185, no. 10, 2022, pp. 1777–1792.e21, https://doi.org/10.1016/j.cell.2022.04.003.
Chen, Ao, Sha Liao, Mengnan Cheng, Kailong Ma, Liang Li Wu, Yiwei Lai, Xiaojie Qiu, et al. "Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays." Cell 185, no. 10 (2022): 1777–1792.e21. https://doi.org/10.1016/j.cell.2022.04.003.
Chen A., Liao S., Cheng M. [и др.] Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays // Cell. — 2022. — Vol. 185, № 10. — P. 1777–1792.e21. — URL: https://doi.org/10.1016/j.cell.2022.04.003
@article{chen2022spatiotemporal,
title = {{Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays}},
author = {Ao Chen and Sha Liao and Mengnan Cheng and Kailong Ma and Liang Li Wu and Yiwei Lai and Xiaojie Qiu and Jin Yang and Jiangshan Xu and Shijie Hao and Xin Wang and Huifang Lü and Xi Xian Chen and Xing Liu and Xin Huang and Li Zhao and Hong Yan and Yujia Jiang and Jian Peng and Shuai Liu and Mengzhe Shen and Chuanyu Liu and Quanshui Li and Yue Yuan and Xiaoyu Wei and Huiwen Zheng and Weimin Feng and Zhifeng Wang and Yang Liu and Zhaohui Wang and Yunzhi Yang and Haitao Xiang and Lei Han and Baoming Qin and Peng-Cheng Guo and Guangyao Lai and Pura Muñoz‐Cánoves and Patrick Henry Maxwell and Jean Paul Thiery and Qingfeng Wu and Fuxiang Zhao and Bichao Chen and Mei Li and Xi Dai and Shuai Wang and Haoyan Kuang and Junhou Hui and Liqun Wang and Ji‐Feng Fei and Ou Wang and Xiaofeng Wei and Haorong Lu and Bo Wang and Shiping Liu and Ying Gu and Ming Ni and Wenwei Zhang and Feng Mu and Ye Yin and Huanming Yang and Michael Lisby and Richard J. Cornall and Jan Mulder and Mathias Uhlén and Miguel Angel Esteban and Yuxiang Li and Longqi Liu and Xun Xu and Jian Wang},
journal = {Cell},
year = {2022},
volume = {185},
number = {10},
pages = {1777--1792.e21},
doi = {10.1016/j.cell.2022.04.003},
url = {https://doi.org/10.1016/j.cell.2022.04.003}
}TY - JOUR AU - Chen, Ao AU - Liao, Sha AU - Cheng, Mengnan AU - Ma, Kailong AU - Wu, Liang Li AU - Lai, Yiwei AU - Qiu, Xiaojie AU - Yang, Jin AU - Xu, Jiangshan AU - Hao, Shijie AU - Wang, Xin AU - Lü, Huifang AU - Chen, Xi Xian AU - Liu, Xing AU - Huang, Xin AU - Zhao, Li AU - Yan, Hong AU - Jiang, Yujia AU - Peng, Jian AU - Liu, Shuai AU - Shen, Mengzhe AU - Liu, Chuanyu AU - Li, Quanshui AU - Yuan, Yue AU - Wei, Xiaoyu AU - Zheng, Huiwen AU - Feng, Weimin AU - Wang, Zhifeng AU - Liu, Yang AU - Wang, Zhaohui AU - Yang, Yunzhi AU - Xiang, Haitao AU - Han, Lei AU - Qin, Baoming AU - Guo, Peng-Cheng AU - Lai, Guangyao AU - Muñoz‐Cánoves, Pura AU - Maxwell, Patrick Henry AU - Thiery, Jean Paul AU - Wu, Qingfeng AU - Zhao, Fuxiang AU - Chen, Bichao AU - Li, Mei AU - Dai, Xi AU - Wang, Shuai AU - Kuang, Haoyan AU - Hui, Junhou AU - Wang, Liqun AU - Fei, Ji‐Feng AU - Wang, Ou AU - Wei, Xiaofeng AU - Lu, Haorong AU - Wang, Bo AU - Liu, Shiping AU - Gu, Ying AU - Ni, Ming AU - Zhang, Wenwei AU - Mu, Feng AU - Yin, Ye AU - Yang, Huanming AU - Lisby, Michael AU - Cornall, Richard J. AU - Mulder, Jan AU - Uhlén, Mathias AU - Esteban, Miguel Angel AU - Li, Yuxiang AU - Liu, Longqi AU - Xu, Xun AU - Wang, Jian TI - Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays JO - Cell VL - 185 IS - 10 SP - 1777 EP - 1792.e21 PY - 2022 DA - 2022/05/01 DO - 10.1016/j.cell.2022.04.003 UR - https://doi.org/10.1016/j.cell.2022.04.003 ER -
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