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Josh Abramson, Jonas Adler, Jack Dunger, Richard Evans, Tim Green, Alexander Pritzel, Olaf Ronneberger, Lindsay Willmore, Andrew J. Ballard, Joshua Bambrick and 38 more
The introduction of AlphaFold 2 1 has spurred a revolution in modelling the structure of proteins and their interactions, enabling a huge range of applications in protein modelling and design 2–6 . Here we describe our AlphaFold 3 model with a substantially updated diffusion-based architecture that is capable of predicting the joint structure of complexes including proteins, nucleic acids, small molecules, ions and modified residues. The new AlphaFold model demonstrates substantially improved accuracy over many previous specialized tools: far greater accuracy for protein–ligand interactions compared with state-of-the-art docking tools, much higher accuracy for protein–nucleic acid interactions compared with nucleic-acid-specific predictors and substantially higher antibody–antigen prediction accuracy compared with AlphaFold-Multimer v.2.3 7,8 . Together, these results show that high-accuracy modelling across biomolecular space is possible within a single unified deep-learning framework.
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Abramson, J., Adler, J., Dunger, J., Evans, R., Green, T., Pritzel, A., Ronneberger, O., Willmore, L., Ballard, A. J., Bambrick, J., Bodenstein, S. W., Evans, D. A., Hung, C.-C., O’Neill, M., Reiman, D., Tunyasuvunakool, K., Wu, Z., Žemgulytė, A., Arvaniti, E., … Jumper, J. (2024). Accurate structure prediction of biomolecular interactions with AlphaFold 3. Nature, 630(8016), 493–500. https://doi.org/10.1038/s41586-024-07487-w
Abramson, Josh, et al. "Accurate structure prediction of biomolecular interactions with AlphaFold 3." Nature, vol. 630, no. 8016, 2024, pp. 493–500, https://doi.org/10.1038/s41586-024-07487-w.
Abramson, Josh, Jonas Adler, Jack Dunger, Richard Evans, Tim Green, Alexander Pritzel, Olaf Ronneberger, et al. "Accurate structure prediction of biomolecular interactions with AlphaFold 3." Nature 630, no. 8016 (2024): 493–500. https://doi.org/10.1038/s41586-024-07487-w.
Abramson J., Adler J., Dunger J. [и др.] Accurate structure prediction of biomolecular interactions with AlphaFold 3 // Nature. — 2024. — Vol. 630, № 8016. — P. 493–500. — URL: https://doi.org/10.1038/s41586-024-07487-w
@article{abramson2024accurate,
title = {{Accurate structure prediction of biomolecular interactions with AlphaFold 3}},
author = {Josh Abramson and Jonas Adler and Jack Dunger and Richard Evans and Tim Green and Alexander Pritzel and Olaf Ronneberger and Lindsay Willmore and Andrew J. Ballard and Joshua Bambrick and Sebastian W. Bodenstein and David A. Evans and Chia-Chun Hung and Michael O’Neill and David Reiman and Kathryn Tunyasuvunakool and Zachary Wu and Akvilė Žemgulytė and Eirini Arvaniti and Charles Beattie and Ottavia Bertolli and Alex Bridgland and Alexey Cherepanov and Miles Congreve and Alexander I. Cowen-Rivers and Andrew Cowie and Michael Figurnov and Fabian B. Fuchs and Hannah Gladman and Rishub Jain and Yousuf A. Khan and Caroline M. R. Low and Kuba Perlin and Anna Potapenko and Pascal Savy and Sukhdeep Singh and Adrian Stecuła and Ashok Thillaisundaram and Catherine Tong and Sergei Yakneen and Ellen D. Zhong and Michal Zielinski and Augustin Žídek and Victor Bapst and Pushmeet Kohli and Max Jaderberg and Demis Hassabis and John Jumper},
journal = {Nature},
year = {2024},
volume = {630},
number = {8016},
pages = {493--500},
doi = {10.1038/s41586-024-07487-w},
url = {https://doi.org/10.1038/s41586-024-07487-w}
}TY - JOUR AU - Abramson, Josh AU - Adler, Jonas AU - Dunger, Jack AU - Evans, Richard AU - Green, Tim AU - Pritzel, Alexander AU - Ronneberger, Olaf AU - Willmore, Lindsay AU - Ballard, Andrew J. AU - Bambrick, Joshua AU - Bodenstein, Sebastian W. AU - Evans, David A. AU - Hung, Chia-Chun AU - O’Neill, Michael AU - Reiman, David AU - Tunyasuvunakool, Kathryn AU - Wu, Zachary AU - Žemgulytė, Akvilė AU - Arvaniti, Eirini AU - Beattie, Charles AU - Bertolli, Ottavia AU - Bridgland, Alex AU - Cherepanov, Alexey AU - Congreve, Miles AU - Cowen-Rivers, Alexander I. AU - Cowie, Andrew AU - Figurnov, Michael AU - Fuchs, Fabian B. AU - Gladman, Hannah AU - Jain, Rishub AU - Khan, Yousuf A. AU - Low, Caroline M. R. AU - Perlin, Kuba AU - Potapenko, Anna AU - Savy, Pascal AU - Singh, Sukhdeep AU - Stecuła, Adrian AU - Thillaisundaram, Ashok AU - Tong, Catherine AU - Yakneen, Sergei AU - Zhong, Ellen D. AU - Zielinski, Michal AU - Žídek, Augustin AU - Bapst, Victor AU - Kohli, Pushmeet AU - Jaderberg, Max AU - Hassabis, Demis AU - Jumper, John TI - Accurate structure prediction of biomolecular interactions with AlphaFold 3 JO - Nature VL - 630 IS - 8016 SP - 493 EP - 500 PY - 2024 DA - 2024/05/08 DO - 10.1038/s41586-024-07487-w UR - https://doi.org/10.1038/s41586-024-07487-w ER -
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