One connector, four scholarly indexes, real DOIs and legal free PDFs. Works in Claude and ChatGPT.
Paste it into Claude or ChatGPT as a custom connector. 3-day free trial.
Jeffrey M. Granja, M. Ryan Corces, Sarah E. Pierce, S. Tansu Bagdatli, Hani Choudhry, Howard Y. Chang, William James Greenleaf
The advent of single-cell chromatin accessibility profiling has accelerated the ability to map gene regulatory landscapes but has outpaced the development of scalable software to rapidly extract biological meaning from these data. Here we present a software suite for single-cell analysis of regulatory chromatin in R (ArchR; https://www.archrproject.com/ ) that enables fast and comprehensive analysis of single-cell chromatin accessibility data. ArchR provides an intuitive, user-focused interface for complex single-cell analyses, including doublet removal, single-cell clustering and cell type identification, unified peak set generation, cellular trajectory identification, DNA element-to-gene linkage, transcription factor footprinting, mRNA expression level prediction from chromatin accessibility and multi-omic integration with single-cell RNA sequencing (scRNA-seq). Enabling the analysis of over 1.2 million single cells within 8 h on a standard Unix laptop, ArchR is a comprehensive software suite for end-to-end analysis of single-cell chromatin accessibility that will accelerate the understanding of gene regulation at the resolution of individual cells.
Formatted from the source metadata, not typed by hand. For a whole reference list, use the citation generator or ask your assistant through Find Research.
Granja, J. M., Corces, M. R., Pierce, S. E., Bagdatli, S. T., Choudhry, H., Chang, H. Y., & Greenleaf, W. J. (2021). ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis. Nature Genetics, 53(3), 403–411. https://doi.org/10.1038/s41588-021-00790-6
Granja, Jeffrey M., et al. "ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis." Nature Genetics, vol. 53, no. 3, 2021, pp. 403–411, https://doi.org/10.1038/s41588-021-00790-6.
Granja, Jeffrey M., M. Ryan Corces, Sarah E. Pierce, S. Tansu Bagdatli, Hani Choudhry, Howard Y. Chang, and William James Greenleaf. "ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis." Nature Genetics 53, no. 3 (2021): 403–411. https://doi.org/10.1038/s41588-021-00790-6.
Granja J. M., Corces M. R., Pierce S. E. [и др.] ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis // Nature Genetics. — 2021. — Vol. 53, № 3. — P. 403–411. — URL: https://doi.org/10.1038/s41588-021-00790-6
@article{granja2021archr,
title = {{ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis}},
author = {Jeffrey M. Granja and M. Ryan Corces and Sarah E. Pierce and S. Tansu Bagdatli and Hani Choudhry and Howard Y. Chang and William James Greenleaf},
journal = {Nature Genetics},
year = {2021},
volume = {53},
number = {3},
pages = {403--411},
doi = {10.1038/s41588-021-00790-6},
url = {https://doi.org/10.1038/s41588-021-00790-6}
}TY - JOUR AU - Granja, Jeffrey M. AU - Corces, M. Ryan AU - Pierce, Sarah E. AU - Bagdatli, S. Tansu AU - Choudhry, Hani AU - Chang, Howard Y. AU - Greenleaf, William James TI - ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis JO - Nature Genetics VL - 53 IS - 3 SP - 403 EP - 411 PY - 2021 DA - 2021/02/25 DO - 10.1038/s41588-021-00790-6 UR - https://doi.org/10.1038/s41588-021-00790-6 ER -
Add Find Research to Claude or ChatGPT and ask in plain language. The assistant reads this record, finds the papers around it and cites only what it actually found:
Setup takes about a minute: add the connector, then start the free trial.
Record from OpenAlex; open-access location from Unpaywall and the indexes. Find Research links only to legal copies.