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Ross D. Markello, Justine Y. Hansen, Zhen-Qi Liu, Vincent Bazinet, Golia Shafiei, Laura E. Suárez, Nadia Blostein, Jakob Seidlitz, Sylvain Baillet, Theodore Daniel Satterthwaite and 3 more
Imaging technologies are increasingly used to generate high-resolution reference maps of brain structure and function. Comparing experimentally generated maps to these reference maps facilitates cross-disciplinary scientific discovery. Although recent data sharing initiatives increase the accessibility of brain maps, data are often shared in disparate coordinate systems, precluding systematic and accurate comparisons. Here we introduce neuromaps, a toolbox for accessing, transforming and analyzing structural and functional brain annotations. We implement functionalities for generating high-quality transformations between four standard coordinate systems. The toolbox includes curated reference maps and biological ontologies of the human brain, such as molecular, microstructural, electrophysiological, developmental and functional ontologies. Robust quantitative assessment of map-to-map similarity is enabled via a suite of spatial autocorrelation-preserving null models. neuromaps combines open-access data with transparent functionality for standardizing and comparing brain maps, providing a systematic workflow for comprehensive structural and functional annotation enrichment analysis of the human brain.
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Markello, R. D., Hansen, J. Y., Liu, Z.-Q., Bazinet, V., Shafiei, G., Suárez, L. E., Blostein, N., Seidlitz, J., Baillet, S., Satterthwaite, T. D., Chakravarty, M. M., Raznahan, A., & Mišić, B. (2022). neuromaps: structural and functional interpretation of brain maps. Nature Methods, 19(11), 1472–1479. https://doi.org/10.1038/s41592-022-01625-w
Markello, Ross D., et al. "neuromaps: structural and functional interpretation of brain maps." Nature Methods, vol. 19, no. 11, 2022, pp. 1472–1479, https://doi.org/10.1038/s41592-022-01625-w.
Markello, Ross D., Justine Y. Hansen, Zhen-Qi Liu, Vincent Bazinet, Golia Shafiei, Laura E. Suárez, Nadia Blostein, et al. "neuromaps: structural and functional interpretation of brain maps." Nature Methods 19, no. 11 (2022): 1472–1479. https://doi.org/10.1038/s41592-022-01625-w.
Markello R. D., Hansen J. Y., Liu Z.-Q. [и др.] neuromaps: structural and functional interpretation of brain maps // Nature Methods. — 2022. — Vol. 19, № 11. — P. 1472–1479. — URL: https://doi.org/10.1038/s41592-022-01625-w
@article{markello2022neuromaps,
title = {{neuromaps: structural and functional interpretation of brain maps}},
author = {Ross D. Markello and Justine Y. Hansen and Zhen-Qi Liu and Vincent Bazinet and Golia Shafiei and Laura E. Suárez and Nadia Blostein and Jakob Seidlitz and Sylvain Baillet and Theodore Daniel Satterthwaite and M. Mallar Chakravarty and Armin Raznahan and Bratislav Mišić},
journal = {Nature Methods},
year = {2022},
volume = {19},
number = {11},
pages = {1472--1479},
doi = {10.1038/s41592-022-01625-w},
url = {https://doi.org/10.1038/s41592-022-01625-w}
}TY - JOUR AU - Markello, Ross D. AU - Hansen, Justine Y. AU - Liu, Zhen-Qi AU - Bazinet, Vincent AU - Shafiei, Golia AU - Suárez, Laura E. AU - Blostein, Nadia AU - Seidlitz, Jakob AU - Baillet, Sylvain AU - Satterthwaite, Theodore Daniel AU - Chakravarty, M. Mallar AU - Raznahan, Armin AU - Mišić, Bratislav TI - neuromaps: structural and functional interpretation of brain maps JO - Nature Methods VL - 19 IS - 11 SP - 1472 EP - 1479 PY - 2022 DA - 2022/10/06 DO - 10.1038/s41592-022-01625-w UR - https://doi.org/10.1038/s41592-022-01625-w ER -
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