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Mosè Manni, Matthew Berkeley, Mathieu Seppey, Felipe A. Simão, Evgeny M. Zdobnov
Methods for evaluating the quality of genomic and metagenomic data are essential to aid genome assembly procedures and to correctly interpret the results of subsequent analyses. BUSCO estimates the completeness and redundancy of processed genomic data based on universal single-copy orthologs. Here, we present new functionalities and major improvements of the BUSCO software, as well as the renewal and expansion of the underlying data sets in sync with the OrthoDB v10 release. Among the major novelties, BUSCO now enables phylogenetic placement of the input sequence to automatically select the most appropriate BUSCO data set for the assessment, allowing the analysis of metagenome-assembled genomes of unknown origin. A newly introduced genome workflow increases the efficiency and runtimes especially on large eukaryotic genomes. BUSCO is the only tool capable of assessing both eukaryotic and prokaryotic species, and can be applied to various data types, from genome assemblies and metagenomic bins, to transcriptomes and gene sets.
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Manni, M., Berkeley, M., Seppey, M., Simão, F. A., & Zdobnov, E. M. (2021). BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes. Molecular Biology and Evolution, 38(10), 4647–4654. https://doi.org/10.1093/molbev/msab199
Manni, Mosè, et al. "BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes." Molecular Biology and Evolution, vol. 38, no. 10, 2021, pp. 4647–4654, https://doi.org/10.1093/molbev/msab199.
Manni, Mosè, Matthew Berkeley, Mathieu Seppey, Felipe A. Simão, and Evgeny M. Zdobnov. "BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes." Molecular Biology and Evolution 38, no. 10 (2021): 4647–4654. https://doi.org/10.1093/molbev/msab199.
Manni M., Berkeley M., Seppey M. [и др.] BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes // Molecular Biology and Evolution. — 2021. — Vol. 38, № 10. — P. 4647–4654. — URL: https://doi.org/10.1093/molbev/msab199
@article{manni2021busco,
title = {{BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes}},
author = {Mosè Manni and Matthew Berkeley and Mathieu Seppey and Felipe A. Simão and Evgeny M. Zdobnov},
journal = {Molecular Biology and Evolution},
year = {2021},
volume = {38},
number = {10},
pages = {4647--4654},
doi = {10.1093/molbev/msab199},
url = {https://doi.org/10.1093/molbev/msab199}
}TY - JOUR AU - Manni, Mosè AU - Berkeley, Matthew AU - Seppey, Mathieu AU - Simão, Felipe A. AU - Zdobnov, Evgeny M. TI - BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes JO - Molecular Biology and Evolution VL - 38 IS - 10 SP - 4647 EP - 4654 PY - 2021 DA - 2021/07/25 DO - 10.1093/molbev/msab199 UR - https://doi.org/10.1093/molbev/msab199 ER -
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