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David Scott Wishart, AnChi Guo, Eponine Oler, Fei Wang, Afia Anjum, Harrison Peters, Raynard Dizon, Zinat Sayeeda, Siyang Tian, Brian L. Lee and 27 more
The Human Metabolome Database or HMDB (https://hmdb.ca) has been providing comprehensive reference information about human metabolites and their associated biological, physiological and chemical properties since 2007. Over the past 15 years, the HMDB has grown and evolved significantly to meet the needs of the metabolomics community and respond to continuing changes in internet and computing technology. This year's update, HMDB 5.0, brings a number of important improvements and upgrades to the database. These should make the HMDB more useful and more appealing to a larger cross-section of users. In particular, these improvements include: (i) a significant increase in the number of metabolite entries (from 114 100 to 217 920 compounds); (ii) enhancements to the quality and depth of metabolite descriptions; (iii) the addition of new structure, spectral and pathway visualization tools; (iv) the inclusion of many new and much more accurately predicted spectral data sets, including predicted NMR spectra, more accurately predicted MS spectra, predicted retention indices and predicted collision cross section data and (v) enhancements to the HMDB's search functions to facilitate better compound identification. Many other minor improvements and updates to the content, the interface, and general performance of the HMDB website have also been made. Overall, we believe these upgrades and updates should greatly enhance the HMDB's ease of use and its potential applications not only in human metabolomics but also in exposomics, lipidomics, nutritional science, biochemistry and clinical chemistry.
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Wishart, D. S., Guo, A., Oler, E., Wang, F., Anjum, A., Peters, H., Dizon, R., Sayeeda, Z., Tian, S., Lee, B. L., Berjanskii, M. V., Mah, R., Yamamoto, M., Jovel, J., Torres-Calzada, C., Hiebert-Giesbrecht, M. R., Lui, V. W., Varshavi, D., Varshavi, D., … Gautam, V. (2021). HMDB 5.0: the Human Metabolome Database for 2022. Nucleic Acids Research, 50(D1), D622–D631. https://doi.org/10.1093/nar/gkab1062
Wishart, David Scott, et al. "HMDB 5.0: the Human Metabolome Database for 2022." Nucleic Acids Research, vol. 50, no. D1, 2021, pp. D622–D631, https://doi.org/10.1093/nar/gkab1062.
Wishart, David Scott, AnChi Guo, Eponine Oler, Fei Wang, Afia Anjum, Harrison Peters, Raynard Dizon, et al. "HMDB 5.0: the Human Metabolome Database for 2022." Nucleic Acids Research 50, no. D1 (2021): D622–D631. https://doi.org/10.1093/nar/gkab1062.
Wishart D. S., Guo A., Oler E. [и др.] HMDB 5.0: the Human Metabolome Database for 2022 // Nucleic Acids Research. — 2021. — Vol. 50, № D1. — P. D622–D631. — URL: https://doi.org/10.1093/nar/gkab1062
@article{wishart2021hmdb,
title = {{HMDB 5.0: the Human Metabolome Database for 2022}},
author = {David Scott Wishart and AnChi Guo and Eponine Oler and Fei Wang and Afia Anjum and Harrison Peters and Raynard Dizon and Zinat Sayeeda and Siyang Tian and Brian L. Lee and Mark V. Berjanskii and Robert Mah and Mai Yamamoto and Juan Jovel and Claudia Torres-Calzada and Mickel Randolph Hiebert-Giesbrecht and Vicki W Lui and Dorna Varshavi and Dorsa Varshavi and Dana Allen and David Arndt and Nitya Khetarpal and Aadhavya Sivakumaran and Karxena Harford and Selena Sanford and Kristen Yee and Xuan Cao and Zachary Budinski and Jaanus Liigand and Lun Zhang and Jiamin Zheng and Rupasri Mandal and Naama Karu and Maija Dambrova and Helgi B. Schiöth and Russell Greiner and Vasuk Gautam},
journal = {Nucleic Acids Research},
year = {2021},
volume = {50},
number = {D1},
pages = {D622--D631},
doi = {10.1093/nar/gkab1062},
url = {https://doi.org/10.1093/nar/gkab1062}
}TY - JOUR AU - Wishart, David Scott AU - Guo, AnChi AU - Oler, Eponine AU - Wang, Fei AU - Anjum, Afia AU - Peters, Harrison AU - Dizon, Raynard AU - Sayeeda, Zinat AU - Tian, Siyang AU - Lee, Brian L. AU - Berjanskii, Mark V. AU - Mah, Robert AU - Yamamoto, Mai AU - Jovel, Juan AU - Torres-Calzada, Claudia AU - Hiebert-Giesbrecht, Mickel Randolph AU - Lui, Vicki W AU - Varshavi, Dorna AU - Varshavi, Dorsa AU - Allen, Dana AU - Arndt, David AU - Khetarpal, Nitya AU - Sivakumaran, Aadhavya AU - Harford, Karxena AU - Sanford, Selena AU - Yee, Kristen AU - Cao, Xuan AU - Budinski, Zachary AU - Liigand, Jaanus AU - Zhang, Lun AU - Zheng, Jiamin AU - Mandal, Rupasri AU - Karu, Naama AU - Dambrova, Maija AU - Schiöth, Helgi B. AU - Greiner, Russell AU - Gautam, Vasuk TI - HMDB 5.0: the Human Metabolome Database for 2022 JO - Nucleic Acids Research VL - 50 IS - D1 SP - D622 EP - D631 PY - 2021 DA - 2021/10/20 DO - 10.1093/nar/gkab1062 UR - https://doi.org/10.1093/nar/gkab1062 ER -
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