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David Sehnal, Sebastian Bittrich, Mandar Deshpande, Radka Svobodová Vařeková, Karel Berka, Václav Bazgier, Sameer S Velankar, Stephen Kevin Burley, Jaroslav Koča, Alexander Rose
Large biomolecular structures are being determined experimentally on a daily basis using established techniques such as crystallography and electron microscopy. In addition, emerging integrative or hybrid methods (I/HM) are producing structural models of huge macromolecular machines and assemblies, sometimes containing 100s of millions of non-hydrogen atoms. The performance requirements for visualization and analysis tools delivering these data are increasing rapidly. Significant progress in developing online, web-native three-dimensional (3D) visualization tools was previously accomplished with the introduction of the LiteMol suite and NGL Viewers. Thereafter, Mol* development was jointly initiated by PDBe and RCSB PDB to combine and build on the strengths of LiteMol (developed by PDBe) and NGL (developed by RCSB PDB). The web-native Mol* Viewer enables 3D visualization and streaming of macromolecular coordinate and experimental data, together with capabilities for displaying structure quality, functional, or biological context annotations. High-performance graphics and data management allows users to simultaneously visualise up to hundreds of (superimposed) protein structures, stream molecular dynamics simulation trajectories, render cell-level models, or display huge I/HM structures. It is the primary 3D structure viewer used by PDBe and RCSB PDB. It can be easily integrated into third-party services. Mol* Viewer is open source and freely available at https://molstar.org/.
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Sehnal, D., Bittrich, S., Deshpande, M., Vařeková, R. S., Berka, K., Bazgier, V., Velankar, S. S., Burley, S. K., Koča, J., & Rose, A. (2021). Mol Viewer: modern web app for 3D visualization and analysis of large biomolecular structures. Nucleic Acids Research, 49*(W1), W431–W437. https://doi.org/10.1093/nar/gkab314
Sehnal, David, et al. "Mol Viewer: modern web app for 3D visualization and analysis of large biomolecular structures." Nucleic Acids Research*, vol. 49, no. W1, 2021, pp. W431–W437, https://doi.org/10.1093/nar/gkab314.
Sehnal, David, Sebastian Bittrich, Mandar Deshpande, Radka Svobodová Vařeková, Karel Berka, Václav Bazgier, Sameer S Velankar, Stephen Kevin Burley, Jaroslav Koča, and Alexander Rose. "Mol Viewer: modern web app for 3D visualization and analysis of large biomolecular structures." Nucleic Acids Research* 49, no. W1 (2021): W431–W437. https://doi.org/10.1093/nar/gkab314.
Sehnal D., Bittrich S., Deshpande M. [и др.] Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures // Nucleic Acids Research. — 2021. — Vol. 49, № W1. — P. W431–W437. — URL: https://doi.org/10.1093/nar/gkab314
@article{sehnal2021viewer,
title = {{Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures}},
author = {David Sehnal and Sebastian Bittrich and Mandar Deshpande and Radka Svobodová Vařeková and Karel Berka and Václav Bazgier and Sameer S Velankar and Stephen Kevin Burley and Jaroslav Koča and Alexander Rose},
journal = {Nucleic Acids Research},
year = {2021},
volume = {49},
number = {W1},
pages = {W431--W437},
doi = {10.1093/nar/gkab314},
url = {https://doi.org/10.1093/nar/gkab314}
}TY - JOUR AU - Sehnal, David AU - Bittrich, Sebastian AU - Deshpande, Mandar AU - Vařeková, Radka Svobodová AU - Berka, Karel AU - Bazgier, Václav AU - Velankar, Sameer S AU - Burley, Stephen Kevin AU - Koča, Jaroslav AU - Rose, Alexander TI - Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures JO - Nucleic Acids Research VL - 49 IS - W1 SP - W431 EP - W437 PY - 2021 DA - 2021/04/26 DO - 10.1093/nar/gkab314 UR - https://doi.org/10.1093/nar/gkab314 ER -
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