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Jiyao Wang, Farideh Chitsaz, Myra K. Derbyshire, Noreen R. Gonzales, Marc Gwadz, Shennan Lu, Gabriele H. Marchler, James S. Song, Narmada Thanki, Roxanne A. Yamashita and 5 more
NLM's conserved domain database (CDD) is a collection of protein domain and protein family models constructed as multiple sequence alignments. Its main purpose is to provide annotation for protein and translated nucleotide sequences with the location of domain footprints and associated functional sites, and to define protein domain architecture as a basis for assigning gene product names and putative/predicted function. CDD has been available publicly for over 20 years and has grown substantially during that time. Maintaining an archive of pre-computed annotation continues to be a challenge and has slowed down the cadence of CDD releases. CDD curation staff builds hierarchical classifications of large protein domain families, adds models for novel domain families via surveillance of the protein 'dark matter' that currently lacks annotation, and now spends considerable effort on providing names and attribution for conserved domain architectures. CDD can be accessed at https://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml.
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Wang, J., Chitsaz, F., Derbyshire, M. K., Gonzales, N. R., Gwadz, M., Lu, S., Marchler, G. H., Song, J. S., Thanki, N., Yamashita, R. A., Yang, M., Zhang, D., Zheng, C., Lanczycki, C. J., & Marchler‐Bauer, A. (2022). The conserved domain database in 2023. Nucleic Acids Research, 51(D1), D384–D388. https://doi.org/10.1093/nar/gkac1096
Wang, Jiyao, et al. "The conserved domain database in 2023." Nucleic Acids Research, vol. 51, no. D1, 2022, pp. D384–D388, https://doi.org/10.1093/nar/gkac1096.
Wang, Jiyao, Farideh Chitsaz, Myra K. Derbyshire, Noreen R. Gonzales, Marc Gwadz, Shennan Lu, Gabriele H. Marchler, et al. "The conserved domain database in 2023." Nucleic Acids Research 51, no. D1 (2022): D384–D388. https://doi.org/10.1093/nar/gkac1096.
Wang J., Chitsaz F., Derbyshire M. K. [и др.] The conserved domain database in 2023 // Nucleic Acids Research. — 2022. — Vol. 51, № D1. — P. D384–D388. — URL: https://doi.org/10.1093/nar/gkac1096
@article{wang2022conserved,
title = {{The conserved domain database in 2023}},
author = {Jiyao Wang and Farideh Chitsaz and Myra K. Derbyshire and Noreen R. Gonzales and Marc Gwadz and Shennan Lu and Gabriele H. Marchler and James S. Song and Narmada Thanki and Roxanne A. Yamashita and Mingzhang Yang and Dachuan Zhang and Chanjuan Zheng and Christopher J. Lanczycki and Aron Marchler‐Bauer},
journal = {Nucleic Acids Research},
year = {2022},
volume = {51},
number = {D1},
pages = {D384--D388},
doi = {10.1093/nar/gkac1096},
url = {https://doi.org/10.1093/nar/gkac1096}
}TY - JOUR AU - Wang, Jiyao AU - Chitsaz, Farideh AU - Derbyshire, Myra K. AU - Gonzales, Noreen R. AU - Gwadz, Marc AU - Lu, Shennan AU - Marchler, Gabriele H. AU - Song, James S. AU - Thanki, Narmada AU - Yamashita, Roxanne A. AU - Yang, Mingzhang AU - Zhang, Dachuan AU - Zheng, Chanjuan AU - Lanczycki, Christopher J. AU - Marchler‐Bauer, Aron TI - The conserved domain database in 2023 JO - Nucleic Acids Research VL - 51 IS - D1 SP - D384 EP - D388 PY - 2022 DA - 2022/10/28 DO - 10.1093/nar/gkac1096 UR - https://doi.org/10.1093/nar/gkac1096 ER -
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