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Congxue Hu, Tengyue Li, Yingqi Xu, Xinxin Zhang, Feng Li, Jing Bai, Jing Chen, Wei Jiang, Kaiyue Yang, Qi Ou and 3 more
CellMarker 2.0 (http://bio-bigdata.hrbmu.edu.cn/CellMarker or http://117.50.127.228/CellMarker/) is an updated database that provides a manually curated collection of experimentally supported markers of various cell types in different tissues of human and mouse. In addition, web tools for analyzing single cell sequencing data are described. We have updated CellMarker 2.0 with more data and several new features, including (i) Appending 36 300 tissue-cell type-maker entries, 474 tissues, 1901 cell types and 4566 markers over the previous version. The current release recruits 26 915 cell markers, 2578 cell types and 656 tissues, resulting in a total of 83 361 tissue-cell type-maker entries. (ii) There is new marker information from 48 sequencing technology sources, including 10X Chromium, Smart-Seq2 and Drop-seq, etc. (iii) Adding 29 types of cell markers, including protein-coding gene lncRNA and processed pseudogene, etc. Additionally, six flexible web tools, including cell annotation, cell clustering, cell malignancy, cell differentiation, cell feature and cell communication, were developed to analysis and visualization of single cell sequencing data. CellMarker 2.0 is a valuable resource for exploring markers of various cell types in different tissues of human and mouse.
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Hu, C., Li, T., Xu, Y., Zhang, X., Li, F., Bai, J., Chen, J., Jiang, W., Yang, K., Ou, Q., Li, X., Wang, P., & Zhang, Y. (2022). CellMarker 2.0: an updated database of manually curated cell markers in human/mouse and web tools based on scRNA-seq data. Nucleic Acids Research, 51(D1), D870–D876. https://doi.org/10.1093/nar/gkac947
Hu, Congxue, et al. "CellMarker 2.0: an updated database of manually curated cell markers in human/mouse and web tools based on scRNA-seq data." Nucleic Acids Research, vol. 51, no. D1, 2022, pp. D870–D876, https://doi.org/10.1093/nar/gkac947.
Hu, Congxue, Tengyue Li, Yingqi Xu, Xinxin Zhang, Feng Li, Jing Bai, Jing Chen, et al. "CellMarker 2.0: an updated database of manually curated cell markers in human/mouse and web tools based on scRNA-seq data." Nucleic Acids Research 51, no. D1 (2022): D870–D876. https://doi.org/10.1093/nar/gkac947.
Hu C., Li T., Xu Y. [и др.] CellMarker 2.0: an updated database of manually curated cell markers in human/mouse and web tools based on scRNA-seq data // Nucleic Acids Research. — 2022. — Vol. 51, № D1. — P. D870–D876. — URL: https://doi.org/10.1093/nar/gkac947
@article{hu2022cellmarker,
title = {{CellMarker 2.0: an updated database of manually curated cell markers in human/mouse and web tools based on scRNA-seq data}},
author = {Congxue Hu and Tengyue Li and Yingqi Xu and Xinxin Zhang and Feng Li and Jing Bai and Jing Chen and Wei Jiang and Kaiyue Yang and Qi Ou and Xia Li and Peng Wang and Yunpeng Zhang},
journal = {Nucleic Acids Research},
year = {2022},
volume = {51},
number = {D1},
pages = {D870--D876},
doi = {10.1093/nar/gkac947},
url = {https://doi.org/10.1093/nar/gkac947}
}TY - JOUR AU - Hu, Congxue AU - Li, Tengyue AU - Xu, Yingqi AU - Zhang, Xinxin AU - Li, Feng AU - Bai, Jing AU - Chen, Jing AU - Jiang, Wei AU - Yang, Kaiyue AU - Ou, Qi AU - Li, Xia AU - Wang, Peng AU - Zhang, Yunpeng TI - CellMarker 2.0: an updated database of manually curated cell markers in human/mouse and web tools based on scRNA-seq data JO - Nucleic Acids Research VL - 51 IS - D1 SP - D870 EP - D876 PY - 2022 DA - 2022/10/11 DO - 10.1093/nar/gkac947 UR - https://doi.org/10.1093/nar/gkac947 ER -
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