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Minoru I. Kanehisa, Miho Furumichi, Yoko Sato, Masayuki Kawashima, Mari Ishiguro-Watanabe
KEGG (https://www.kegg.jp) is a manually curated database resource integrating various biological objects categorized into systems, genomic, chemical and health information. Each object (database entry) is identified by the KEGG identifier (kid), which generally takes the form of a prefix followed by a five-digit number, and can be retrieved by appending /entry/kid in the URL. The KEGG pathway map viewer, the Brite hierarchy viewer and the newly released KEGG genome browser can be launched by appending /pathway/kid, /brite/kid and /genome/kid, respectively, in the URL. Together with an improved annotation procedure for KO (KEGG Orthology) assignment, an increasing number of eukaryotic genomes have been included in KEGG for better representation of organisms in the taxonomic tree. Multiple taxonomy files are generated for classification of KEGG organisms and viruses, and the Brite hierarchy viewer is used for taxonomy mapping, a variant of Brite mapping in the new KEGG Mapper suite. The taxonomy mapping enables analysis of, for example, how functional links of genes in the pathway and physical links of genes on the chromosome are conserved among organism groups.
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Kanehisa, M. I., Furumichi, M., Sato, Y., Kawashima, M., & Ishiguro-Watanabe, M. (2022). KEGG for taxonomy-based analysis of pathways and genomes. Nucleic Acids Research, 51(D1), D587–D592. https://doi.org/10.1093/nar/gkac963
Kanehisa, Minoru I., et al. "KEGG for taxonomy-based analysis of pathways and genomes." Nucleic Acids Research, vol. 51, no. D1, 2022, pp. D587–D592, https://doi.org/10.1093/nar/gkac963.
Kanehisa, Minoru I., Miho Furumichi, Yoko Sato, Masayuki Kawashima, and Mari Ishiguro-Watanabe. "KEGG for taxonomy-based analysis of pathways and genomes." Nucleic Acids Research 51, no. D1 (2022): D587–D592. https://doi.org/10.1093/nar/gkac963.
Kanehisa M. I., Furumichi M., Sato Y. [и др.] KEGG for taxonomy-based analysis of pathways and genomes // Nucleic Acids Research. — 2022. — Vol. 51, № D1. — P. D587–D592. — URL: https://doi.org/10.1093/nar/gkac963
@article{kanehisa2022kegg,
title = {{KEGG for taxonomy-based analysis of pathways and genomes}},
author = {Minoru I. Kanehisa and Miho Furumichi and Yoko Sato and Masayuki Kawashima and Mari Ishiguro-Watanabe},
journal = {Nucleic Acids Research},
year = {2022},
volume = {51},
number = {D1},
pages = {D587--D592},
doi = {10.1093/nar/gkac963},
url = {https://doi.org/10.1093/nar/gkac963}
}TY - JOUR AU - Kanehisa, Minoru I. AU - Furumichi, Miho AU - Sato, Yoko AU - Kawashima, Masayuki AU - Ishiguro-Watanabe, Mari TI - KEGG for taxonomy-based analysis of pathways and genomes JO - Nucleic Acids Research VL - 51 IS - D1 SP - D587 EP - D592 PY - 2022 DA - 2022/10/13 DO - 10.1093/nar/gkac963 UR - https://doi.org/10.1093/nar/gkac963 ER -
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