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Liis Kolberg, Uku Raudvere, Ivan Kuzmin, Priit Adler, Jaak Vilo, Hedi Peterson
g:Profiler is a reliable and up-to-date functional enrichment analysis tool that supports various evidence types, identifier types and organisms. The toolset integrates many databases, including Gene Ontology, KEGG and TRANSFAC, to provide a comprehensive and in-depth analysis of gene lists. It also provides interactive and intuitive user interfaces and supports ordered queries and custom statistical backgrounds, among other settings. g:Profiler provides multiple programmatic interfaces to access its functionality. These can be easily integrated into custom workflows and external tools, making them valuable resources for researchers who want to develop their own solutions. g:Profiler has been available since 2007 and is used to analyse millions of queries. Research reproducibility and transparency are achieved by maintaining working versions of all past database releases since 2015. g:Profiler supports 849 species, including vertebrates, plants, fungi, insects and parasites, and can analyse any organism through user-uploaded custom annotation files. In this update article, we introduce a novel filtering method highlighting Gene Ontology driver terms, accompanied by new graph visualizations providing a broader context for significant Gene Ontology terms. As a leading enrichment analysis and gene list interoperability service, g:Profiler offers a valuable resource for genetics, biology and medical researchers. It is freely accessible at https://biit.cs.ut.ee/gprofiler.
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Kolberg, L., Raudvere, U., Kuzmin, I., Adler, P., Vilo, J., & Peterson, H. (2023). g:Profiler—interoperable web service for functional enrichment analysis and gene identifier mapping (2023 update). Nucleic Acids Research, 51(W1), W207–W212. https://doi.org/10.1093/nar/gkad347
Kolberg, Liis, et al. "g:Profiler—interoperable web service for functional enrichment analysis and gene identifier mapping (2023 update)." Nucleic Acids Research, vol. 51, no. W1, 2023, pp. W207–W212, https://doi.org/10.1093/nar/gkad347.
Kolberg, Liis, Uku Raudvere, Ivan Kuzmin, Priit Adler, Jaak Vilo, and Hedi Peterson. "g:Profiler—interoperable web service for functional enrichment analysis and gene identifier mapping (2023 update)." Nucleic Acids Research 51, no. W1 (2023): W207–W212. https://doi.org/10.1093/nar/gkad347.
Kolberg L., Raudvere U., Kuzmin I. [и др.] g:Profiler—interoperable web service for functional enrichment analysis and gene identifier mapping (2023 update) // Nucleic Acids Research. — 2023. — Vol. 51, № W1. — P. W207–W212. — URL: https://doi.org/10.1093/nar/gkad347
@article{kolberg2023gprofilerinteroperable,
title = {{g:Profiler—interoperable web service for functional enrichment analysis and gene identifier mapping (2023 update)}},
author = {Liis Kolberg and Uku Raudvere and Ivan Kuzmin and Priit Adler and Jaak Vilo and Hedi Peterson},
journal = {Nucleic Acids Research},
year = {2023},
volume = {51},
number = {W1},
pages = {W207--W212},
doi = {10.1093/nar/gkad347},
url = {https://doi.org/10.1093/nar/gkad347}
}TY - JOUR AU - Kolberg, Liis AU - Raudvere, Uku AU - Kuzmin, Ivan AU - Adler, Priit AU - Vilo, Jaak AU - Peterson, Hedi TI - g:Profiler—interoperable web service for functional enrichment analysis and gene identifier mapping (2023 update) JO - Nucleic Acids Research VL - 51 IS - W1 SP - W207 EP - W212 PY - 2023 DA - 2023/05/05 DO - 10.1093/nar/gkad347 UR - https://doi.org/10.1093/nar/gkad347 ER -
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