- Published
- 2023-05-05
- Venue
- Nucleic Acids Research, vol. 51, no. W1, pp. W587-W592
- Cited by
- 1,365
- Open access
- Yes, gold
- DOI
- 10.1093/nar/gkad359
- PubMed
- 37144476
Abstract
tvBOT is a user-friendly and efficient web application for visualizing, modifying, and annotating phylogenetic trees. It is highly efficient in data preparation without requiring redundant style and syntax data. Tree annotations are powered by a data-driven engine that only requires practical data organized in uniform formats and saved as one table file. A layer manager is developed to manage annotation dataset layers, allowing the addition of a specific layer by selecting the columns of a corresponding annotation data file. Furthermore, tvBOT renders style adjustments in real-time and diversified ways. All style adjustments can be made on a highly interactive user interface and are available for mobile devices. The display engine allows the changes to be updated and rendered in real-time. In addition, tvBOT supports the combination display of 26 annotation dataset types to achieve multiple formats for tree annotations with reusable phylogenetic data. Besides several publication-ready graphics formats, JSON format can be exported to save the final drawing state and all related data, which can be shared with other users, uploaded to restore the final drawing state for re-editing or used as a style template for quickly retouching a new tree file. tvBOT is freely available at: https://www.chiplot.online/tvbot.html.
Cite this paper
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- APA 7
Xie, J., Chen, Y., Cai, G., Cai, R., Hu, Z., & Wang, H. (2023). Tree Visualization By One Table (tvBOT): a web application for visualizing, modifying and annotating phylogenetic trees. Nucleic Acids Research, 51(W1), W587–W592. https://doi.org/10.1093/nar/gkad359
- MLA 9
Xie, Jianmin, et al. "Tree Visualization By One Table (tvBOT): a web application for visualizing, modifying and annotating phylogenetic trees." Nucleic Acids Research, vol. 51, no. W1, 2023, pp. W587–W592, https://doi.org/10.1093/nar/gkad359.
- Chicago
Xie, Jianmin, Yuerong Chen, Guanjing Cai, Runlin Cai, Zhong Hu, and Hui Wang. "Tree Visualization By One Table (tvBOT): a web application for visualizing, modifying and annotating phylogenetic trees." Nucleic Acids Research 51, no. W1 (2023): W587–W592. https://doi.org/10.1093/nar/gkad359.
- GOST
Xie J., Chen Y., Cai G. [и др.] Tree Visualization By One Table (tvBOT): a web application for visualizing, modifying and annotating phylogenetic trees // Nucleic Acids Research. — 2023. — Vol. 51, № W1. — P. W587–W592. — URL: https://doi.org/10.1093/nar/gkad359
- BibTeX
@article{xie2023tree, title = {{Tree Visualization By One Table (tvBOT): a web application for visualizing, modifying and annotating phylogenetic trees}}, author = {Jianmin Xie and Yuerong Chen and Guanjing Cai and Runlin Cai and Zhong Hu and Hui Wang}, journal = {Nucleic Acids Research}, year = {2023}, volume = {51}, number = {W1}, pages = {W587--W592}, doi = {10.1093/nar/gkad359}, url = {https://doi.org/10.1093/nar/gkad359} }- RIS
TY - JOUR AU - Xie, Jianmin AU - Chen, Yuerong AU - Cai, Guanjing AU - Cai, Runlin AU - Hu, Zhong AU - Wang, Hui TI - Tree Visualization By One Table (tvBOT): a web application for visualizing, modifying and annotating phylogenetic trees JO - Nucleic Acids Research VL - 51 IS - W1 SP - W587 EP - W592 PY - 2023 DA - 2023/05/05 DO - 10.1093/nar/gkad359 UR - https://doi.org/10.1093/nar/gkad359 ER -
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