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The Galaxy Community, Linelle Ann L Abueg, Enis Afgan, Olivier Allart, Ahmed Awan, Wendi Bacon, Dannon Baker, Madeline E. Bassetti, Bérénice Batut, Matthias Bernt and 121 more
Galaxy (https://galaxyproject.org) is deployed globally, predominantly through free-to-use services, supporting user-driven research that broadens in scope each year. Users are attracted to public Galaxy services by platform stability, tool and reference dataset diversity, training, support and integration, which enables complex, reproducible, shareable data analysis. Applying the principles of user experience design (UXD), has driven improvements in accessibility, tool discoverability through Galaxy Labs/subdomains, and a redesigned Galaxy ToolShed. Galaxy tool capabilities are progressing in two strategic directions: integrating general purpose graphical processing units (GPGPU) access for cutting-edge methods, and licensed tool support. Engagement with global research consortia is being increased by developing more workflows in Galaxy and by resourcing the public Galaxy services to run them. The Galaxy Training Network (GTN) portfolio has grown in both size, and accessibility, through learning paths and direct integration with Galaxy tools that feature in training courses. Code development continues in line with the Galaxy Project roadmap, with improvements to job scheduling and the user interface. Environmental impact assessment is also helping engage users and developers, reminding them of their role in sustainability, by displaying estimated CO2 emissions generated by each Galaxy job.
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Community, T. G., Abueg, L. A. L., Afgan, E., Allart, O., Awan, A., Bacon, W., Baker, D., Bassetti, M. E., Batut, B., Bernt, M., Blankenberg, D. J., Bombarely, A., Bretaudeau, A., Bromhead, C. J., Burke, M. L., Capon, P. K., Čech, M., Chavero-Diez, M., Chilton, J. M., … Zoabi, R. (2024). The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update. Nucleic Acids Research, 52(W1), W83–W94. https://doi.org/10.1093/nar/gkae410
Community, The Galaxy, et al. "The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update." Nucleic Acids Research, vol. 52, no. W1, 2024, pp. W83–W94, https://doi.org/10.1093/nar/gkae410.
Community, The Galaxy, Linelle Ann L Abueg, Enis Afgan, Olivier Allart, Ahmed Awan, Wendi Bacon, Dannon Baker, et al. "The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update." Nucleic Acids Research 52, no. W1 (2024): W83–W94. https://doi.org/10.1093/nar/gkae410.
Community T. G., Abueg L. A. L., Afgan E. [и др.] The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update // Nucleic Acids Research. — 2024. — Vol. 52, № W1. — P. W83–W94. — URL: https://doi.org/10.1093/nar/gkae410
@article{community2024galaxy,
title = {{The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update}},
author = {The Galaxy Community and Linelle Ann L Abueg and Enis Afgan and Olivier Allart and Ahmed Awan and Wendi Bacon and Dannon Baker and Madeline E. Bassetti and Bérénice Batut and Matthias Bernt and Daniel J Blankenberg and Aureliano Bombarely and Anthony Bretaudeau and Catherine J. Bromhead and Melissa L. Burke and Patrick K. Capon and Martin Čech and María Chavero-Diez and John M. Chilton and Tyler Collins and Frederik Coppens and Nate Coraor and Gianmauro Cuccuru and Fabio Cumbo and John Davis and Paul F G De Geest and Willem de Koning and Martin Demko and Assunta D DeSanto and José Manuel Domínguez Begines and Maria Doyle and Bert Droesbeke and Anika Erxleben and Melanie Christine Föll and Giulio Formenti and Anne Fouilloux and Rendani Gangazhe and Tanguy Genthon and Jeremy Goecks and Alejandra N Gonzalez-Beltran and Nuwan Goonasekera and Nadia Goué and Timothy J. Griffin and Björn Andreas Grüning and Aysam Guerler and Sveinung Gundersen and Ove Gustafsson and Christina Hall and Thomas W.R. Harrop and Helge Hecht and Alireza Heidari and Tillman Heisner and Florian Heyl and Saskia Hiltemann and Hans-Rudolf Hotz and Cameron J. Hyde and Pratik Dilip Jagtap and Julia Jakiela and James E. Johnson and Jayadev Joshi and Marie Jossé and Khaled Jumah and Matúš Kalaš and Katarzyna Kamieniecka and Tunc Kayikcioglu and Markus Konkol and Leonid Kostrykin and Natalie Kucher and Anup Kumar and Mira Kuntz and Delphine Larivière and Ross M Lazarus and Yvan Le Bras and Gildas Le Corguillé and Justin Lee and Simone Leo and Leandro Liborio and Romane Libouban and David López Tabernero and Lucille Lopez‐Delisle and Laila S Los and Alexandru Mahmoud and Igor V. Makunin and Pierre Marin and Subina Mehta and Winnie Mok and Pablo A Moreno and François Morier-Genoud and Stephen Mosher and Teresa Müller and Engy Mohamed Taha Nasr and Anton Nekrutenko and Tiffanie Maree Nelson and Asime J Oba and Alexander Ostrovsky and Polina Polunina and Krzysztof Poterlowicz and Elliott James Price and Gareth R. Price and Helena Rasche and Bryan A. Raubenolt and Coline Royaux and Luke Sargent and Michelle T Savage and V. Savchenko and Denys Savchenko and Michael C. Schatz and Pauline Seguineau and Beatriz Serrano‐Solano and Nicola Soranzo and Sanjay Kumar Srikakulam and Keith Suderman and Anna Syme and Marco Antonio Tangaro and Jonathan A. Tedds and Mehmet Tekman and Mike W. C. Thang and Anil S. Thanki and Michaël Uhl and Marius van den Beek and Deepti Varshney and Jennifer Vessio and Pavankumar Videm and Greg Von Kuster and Gregory R. Watson and Natalie Whitaker-Allen and U. Winter and Martin Wolstencroft and Federico Zambelli and Paul F. Zierep and Rand Zoabi},
journal = {Nucleic Acids Research},
year = {2024},
volume = {52},
number = {W1},
pages = {W83--W94},
doi = {10.1093/nar/gkae410},
url = {https://doi.org/10.1093/nar/gkae410}
}TY - JOUR AU - Community, The Galaxy AU - Abueg, Linelle Ann L AU - Afgan, Enis AU - Allart, Olivier AU - Awan, Ahmed AU - Bacon, Wendi AU - Baker, Dannon AU - Bassetti, Madeline E. AU - Batut, Bérénice AU - Bernt, Matthias AU - Blankenberg, Daniel J AU - Bombarely, Aureliano AU - Bretaudeau, Anthony AU - Bromhead, Catherine J. AU - Burke, Melissa L. AU - Capon, Patrick K. AU - Čech, Martin AU - Chavero-Diez, María AU - Chilton, John M. AU - Collins, Tyler AU - Coppens, Frederik AU - Coraor, Nate AU - Cuccuru, Gianmauro AU - Cumbo, Fabio AU - Davis, John AU - Geest, Paul F G De AU - Koning, Willem de AU - Demko, Martin AU - DeSanto, Assunta D AU - Begines, José Manuel Domínguez AU - Doyle, Maria AU - Droesbeke, Bert AU - Erxleben, Anika AU - Föll, Melanie Christine AU - Formenti, Giulio AU - Fouilloux, Anne AU - Gangazhe, Rendani AU - Genthon, Tanguy AU - Goecks, Jeremy AU - Gonzalez-Beltran, Alejandra N AU - Goonasekera, Nuwan AU - Goué, Nadia AU - Griffin, Timothy J. AU - Grüning, Björn Andreas AU - Guerler, Aysam AU - Gundersen, Sveinung AU - Gustafsson, Ove AU - Hall, Christina AU - Harrop, Thomas W.R. AU - Hecht, Helge AU - Heidari, Alireza AU - Heisner, Tillman AU - Heyl, Florian AU - Hiltemann, Saskia AU - Hotz, Hans-Rudolf AU - Hyde, Cameron J. AU - Jagtap, Pratik Dilip AU - Jakiela, Julia AU - Johnson, James E. AU - Joshi, Jayadev AU - Jossé, Marie AU - Jumah, Khaled AU - Kalaš, Matúš AU - Kamieniecka, Katarzyna AU - Kayikcioglu, Tunc AU - Konkol, Markus AU - Kostrykin, Leonid AU - Kucher, Natalie AU - Kumar, Anup AU - Kuntz, Mira AU - Larivière, Delphine AU - Lazarus, Ross M AU - Bras, Yvan Le AU - Corguillé, Gildas Le AU - Lee, Justin AU - Leo, Simone AU - Liborio, Leandro AU - Libouban, Romane AU - Tabernero, David López AU - Lopez‐Delisle, Lucille AU - Los, Laila S AU - Mahmoud, Alexandru AU - Makunin, Igor V. AU - Marin, Pierre AU - Mehta, Subina AU - Mok, Winnie AU - Moreno, Pablo A AU - Morier-Genoud, François AU - Mosher, Stephen AU - Müller, Teresa AU - Nasr, Engy Mohamed Taha AU - Nekrutenko, Anton AU - Nelson, Tiffanie Maree AU - Oba, Asime J AU - Ostrovsky, Alexander AU - Polunina, Polina AU - Poterlowicz, Krzysztof AU - Price, Elliott James AU - Price, Gareth R. AU - Rasche, Helena AU - Raubenolt, Bryan A. AU - Royaux, Coline AU - Sargent, Luke AU - Savage, Michelle T AU - Savchenko, V. AU - Savchenko, Denys AU - Schatz, Michael C. AU - Seguineau, Pauline AU - Serrano‐Solano, Beatriz AU - Soranzo, Nicola AU - Srikakulam, Sanjay Kumar AU - Suderman, Keith AU - Syme, Anna AU - Tangaro, Marco Antonio AU - Tedds, Jonathan A. AU - Tekman, Mehmet AU - Thang, Mike W. C. AU - Thanki, Anil S. AU - Uhl, Michaël AU - Beek, Marius van den AU - Varshney, Deepti AU - Vessio, Jennifer AU - Videm, Pavankumar AU - Kuster, Greg Von AU - Watson, Gregory R. AU - Whitaker-Allen, Natalie AU - Winter, U. AU - Wolstencroft, Martin AU - Zambelli, Federico AU - Zierep, Paul F. AU - Zoabi, Rand TI - The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update JO - Nucleic Acids Research VL - 52 IS - W1 SP - W83 EP - W94 PY - 2024 DA - 2024/05/03 DO - 10.1093/nar/gkae410 UR - https://doi.org/10.1093/nar/gkae410 ER -
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