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Alex D. Twyford, Jordan Beasley, Ian Barnes, Heather Allen, Freja Azzopardi, David Bell, Mark L. Blaxter, Gavin R. Broad, Lucía Campos, Darren Chooneea and 31 more
Biodiversity genomics research requires reliable organismal identification, which can be difficult based on morphology alone. DNA-based identification using DNA barcoding can provide confirmation of species identity and resolve taxonomic issues but is rarely used in studies generating reference genomes. Here, we describe the development and implementation of DNA barcoding for the Darwin Tree of Life Project (DToL), which aims to sequence and assemble high quality reference genomes for all eukaryotic species in Britain and Ireland. We present a standardised framework for DNA barcode sequencing and data interpretation that is then adapted for diverse organismal groups. DNA barcoding data from over 12,000 DToL specimens has identified up to 20% of samples requiring additional verification, with 2% of seed plants and 3.5% of animal specimens subsequently having their names changed. We also make recommendations for future developments using new sequencing approaches and streamlined bioinformatic approaches.
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Twyford, A. D., Beasley, J., Barnes, I., Allen, H., Azzopardi, F., Bell, D., Blaxter, M. L., Broad, G. R., Campos, L., Chooneea, D., Crowley, L. M., Cuber, P., Cunliffe, M., Dombrowski, A., Douglas, B., Forrest, L. L., Gaya, E., Greeves, C., Griffin, C., … Woof, K. (2024). A DNA barcoding framework for taxonomic verification in the Darwin Tree of Life Project. Wellcome Open Research, 9, 339. https://doi.org/10.12688/wellcomeopenres.21143.1
Twyford, Alex D., et al. "A DNA barcoding framework for taxonomic verification in the Darwin Tree of Life Project." Wellcome Open Research, vol. 9, 2024, pp. 339, https://doi.org/10.12688/wellcomeopenres.21143.1.
Twyford, Alex D., Jordan Beasley, Ian Barnes, Heather Allen, Freja Azzopardi, David Bell, Mark L. Blaxter, et al. "A DNA barcoding framework for taxonomic verification in the Darwin Tree of Life Project." Wellcome Open Research 9 (2024): 339. https://doi.org/10.12688/wellcomeopenres.21143.1.
Twyford A. D., Beasley J., Barnes I. [и др.] A DNA barcoding framework for taxonomic verification in the Darwin Tree of Life Project // Wellcome Open Research. — 2024. — Vol. 9. — P. 339. — URL: https://doi.org/10.12688/wellcomeopenres.21143.1
@article{twyford2024barcoding,
title = {{A DNA barcoding framework for taxonomic verification in the Darwin Tree of Life Project}},
author = {Alex D. Twyford and Jordan Beasley and Ian Barnes and Heather Allen and Freja Azzopardi and David Bell and Mark L. Blaxter and Gavin R. Broad and Lucía Campos and Darren Chooneea and Liam M Crowley and Piotr Cuber and Michael Cunliffe and Alexandra Dombrowski and Brian Douglas and Laura L. Forrest and Ester Gaya and Clementine Greeves and Claire Griffin and Joanna Harley and Michelle L. Hart and Peter W. H. Holland and Peter M. Hollingsworth and Inez Januszczak and Amanda Jones and Paul Julian Kersey and Estelle Silvia Kilias and Mara Lawniczak and Owen T. Lewis and Sahr Mian and Alice Minotto and Raju Misra and Peter O. Mulhair and Lyndall Pereira da Conceicoa and Benjamin Wills Price and Silvia Salatino and Felix Shaw and Olga Sivell and Laura Sivess and Rebekka Uhl and Kieran Woof},
journal = {Wellcome Open Research},
year = {2024},
volume = {9},
pages = {339},
doi = {10.12688/wellcomeopenres.21143.1},
url = {https://doi.org/10.12688/wellcomeopenres.21143.1}
}TY - JOUR AU - Twyford, Alex D. AU - Beasley, Jordan AU - Barnes, Ian AU - Allen, Heather AU - Azzopardi, Freja AU - Bell, David AU - Blaxter, Mark L. AU - Broad, Gavin R. AU - Campos, Lucía AU - Chooneea, Darren AU - Crowley, Liam M AU - Cuber, Piotr AU - Cunliffe, Michael AU - Dombrowski, Alexandra AU - Douglas, Brian AU - Forrest, Laura L. AU - Gaya, Ester AU - Greeves, Clementine AU - Griffin, Claire AU - Harley, Joanna AU - Hart, Michelle L. AU - Holland, Peter W. H. AU - Hollingsworth, Peter M. AU - Januszczak, Inez AU - Jones, Amanda AU - Kersey, Paul Julian AU - Kilias, Estelle Silvia AU - Lawniczak, Mara AU - Lewis, Owen T. AU - Mian, Sahr AU - Minotto, Alice AU - Misra, Raju AU - Mulhair, Peter O. AU - Conceicoa, Lyndall Pereira da AU - Price, Benjamin Wills AU - Salatino, Silvia AU - Shaw, Felix AU - Sivell, Olga AU - Sivess, Laura AU - Uhl, Rebekka AU - Woof, Kieran TI - A DNA barcoding framework for taxonomic verification in the Darwin Tree of Life Project JO - Wellcome Open Research VL - 9 SP - 339 PY - 2024 DA - 2024/06/24 DO - 10.12688/wellcomeopenres.21143.1 UR - https://doi.org/10.12688/wellcomeopenres.21143.1 ER -
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